Download Data
=============


Depending on the data you are interested in, you will need to navigate to the appropriate location.

1. On the `entries page <https://www.bio2byte.be/gpcrchimeradb/entries>`_:

You can select your entry/entries of interest and download:
    -   Their **entire description (sequence, structural and biophysical level)** in JSON format (1 file per selected entry).
    -   Their **biophysical profile** in CSV format (1 file per selected entry).

   .. image:: images/Download_entries.png
      :alt: Example image description
      :width: 600px

2. On the entry page of a GPCR of interest: 

At the top of the entry page of a GPCR of interest (banner), you can download:
    -   Its **sequence** in FASTA format.
    -   Its **3D structures or models** in PDB format.
    -   Its **biophysical profile** in CSV format.
    -   Its **entire description (sequence, structural and biophysical level)** in JSON format.
    -   The **entire description (sequence, structural and biophysical level) of a residue of interest** in JSON format by selecting that residue in the Sequence Properties section. 
    
       .. image:: images/Download_entry_page.png
         :alt: Example image description
         :width: 600px

    
    -   **Colorized 3D structure or model**: In the 3D viewer, you can colorize your 3D structure of interest based on its biophysical features or, for chimeric entries, based on its cutting points or difference in biophysical behavior compared to its parents.
         Once your structure is colorized, you can download it with as Bfactor values, the values of the selected feature to colorize your structure.
         Open your favorite structure viewer (Pymol or Mol* for example) and load your downloaded structure. Colorize it as you would colorize a 3D structure based on its Bfactor or pLDDT.
         You can now continue to analyze your colorized 3D structure on your local machine!
   
   .. image:: images/download_3Dstructure.png
      :alt: Example image description
      :width: 600px


3. On the GPCRchimeraDB Zenodo:

Download all info of all entries in JSON format (1 file per entry) on Zenodo. On Zenodo you can also download the Master Alignment behind the Sequence Alignment tool.

4. GPCRchimeraDB `GitHub <https://github.com/Bio2Byte/GPCRchimeraDB>`_:

Access the code on `GitHub <https://github.com/Bio2Byte/GPCRchimeraDB>`_ used to retrieve all the information available on GPCRchimeraDB to describe the entries.